EDNA2: E-probe Diagnostic for Nucleic Acid Analysis

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  • Stobbe, AH, Daniels, J, Espindola, AS, Verma, R, Melcher, U, Ochoa-Coronal F, Garzon, C, Fletcher, J, and Schneider, W. 2013. E-probe Diagnostic Nucleic acid Analysis (EDNA): A theoretical approach for handling next generation sequencing data for diagnostics. Journal of Microbiological Methods, 94, 356-366.

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  • Espindola AS., Garzon CD., Schneider WL., Hoyt PR., Marek SM., Garzon CD. 2015. A new approach for detecting Fungal and Oomycete plant pathogens in Next Generation Sequencing metagenome data utilizing Electronic Probes. International Journal of Data Mining and Bioinfomatics 12:115–128. DOI: 10.1504/IJDMB.2015.069422.

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  • Stobbe AH., Schneider WL., Hoyt PR., Melcher U. 2014. Screening Metagenomic Data for Viruses Using the E-Probe Diagnostic Nucleic Acid Assay. Phytopathology 104:1125–1129. DOI: 10.1094/PHYTO-11-13-0310-R.

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  • Visser M., Burger JT., Maree HJ. 2016. Targeted virus detection in next-generation sequencing data using an automated e-probe based approach. Virology 495:122–128. DOI: 10.1016/j.virol.2016.05.008.

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  • Melcher U., Verma R., Schneider WL. 2014. Metagenomic search strategies for interactions among plants and multiple microbes. Frontiers in Plant Science 5:268. DOI: 10.3389/fpls.2014.00268.

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